Microbiome Stability Scoring Explorer
Upload raw FASTA, translate a MicrobeAtlas sample into representative OTU sequences,
or build a synthetic community by taxonomy. Every route ends in the same pipeline:
ProkBERT mean pooling, large-notext scoring, and linked embedding views.
Upload genes directly in FASTA format. Sequences longer than 1024 nt are trimmed and only the first 800 records are used.
Bring in a taxa file exported from MicrobeAtlas. Go to
MicrobeAtlas sample detail, click Download, and upload the taxa TSV here.
OTU IDs from SHORT_TID are translated to representative sequences using otus.97.allinfo.
Search the OTU index by OTU ID, taxon label, or taxonomy string. Matching OTUs appear directly below as you type, so you can add them without opening another widget.
Current community
id | taxonomy |
|---|---|
Top members by stability score
id | stability_score | taxonomy |
|---|---|---|
Members used in the run
id | stability_score | taxonomy |
|---|---|---|